Ancrocorticia populi gen. nov., sp. nov, isolated from the symptomatic bark of Populus × euramericana canker.
Identifieur interne : 000B28 ( Main/Exploration ); précédent : 000B27; suivant : 000B29Ancrocorticia populi gen. nov., sp. nov, isolated from the symptomatic bark of Populus × euramericana canker.
Auteurs : Guan-Tang Xu [République populaire de Chine] ; Han Xue [République populaire de Chine] ; Chun-Gen Piao [République populaire de Chine] ; Min-Wei Guo [République populaire de Chine] ; Yong Li [République populaire de Chine]Source :
- MicrobiologyOpen [ 2045-8827 ] ; 2019.
Abstract
A Gram-staining positive facultative anaerobic, non-motile strain, sk1b4T , was isolated from canker of symptomatic bark tissue of a Populus × euramericana. 16S rRNA gene sequence analyses showed that strain sk1b4T shared the highest similarity with Arcanobacterium phocisimile (94.1%). Within the phylogenetic tree, the novel isolate formed a distinct branch from Actinobaculum, Arcanobacterium, and Trueperella. The percentage of conserved proteins calculated from genomic sequence indicated a low level of relatedness between the novel strain and its phylogenetic neighbors. Growth of the novel strain occurred at temperatures between 10 and 41°C, and within a pH range of 6.0-9.0; optimal growth occurred at 30°C and at pH 6.0-9.0. Growth also occurred within a NaCl concentration of 1%-5% (w/v). The major fatty acids of the strain were C14:0 , C16:0 , and C18:1 ω9c, and major polar lipids were glycolipid, phosphatidylinositol mannoside, phospholipid, diphosphatidylglycerol, and phosphatidylglycerol. Respiratory quinone was absent. On the basis of phenotypic and genotypic characteristics, we propose that the novel isolate should be classified as a novel species in a new genus: Ancrocorticia populi gen. nov., sp. nov. The type strain is sk1b4T (=CFCC 14564T = KCTC 39919T ).
DOI: 10.1002/mbo3.792
PubMed: 30656854
PubMed Central: PMC6612551
Affiliations:
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type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name><affiliation wicri:level="3"><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Guo, Min Wei" sort="Guo, Min Wei" uniqKey="Guo M" first="Min-Wei" last="Guo">Min-Wei Guo</name><affiliation wicri:level="3"><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author><author><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name><affiliation wicri:level="3"><nlm:affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing</wicri:regionArea><placeName><settlement type="city">Pékin</settlement></placeName></affiliation></author></analytic><series><title level="j">MicrobiologyOpen</title><idno type="eISSN">2045-8827</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A Gram-staining positive facultative anaerobic, non-motile strain, sk1b4<sup>T</sup> , was isolated from canker of symptomatic bark tissue of a Populus × euramericana. 16S rRNA gene sequence analyses showed that strain sk1b4<sup>T</sup> shared the highest similarity with Arcanobacterium phocisimile (94.1%). Within the phylogenetic tree, the novel isolate formed a distinct branch from Actinobaculum, Arcanobacterium, and Trueperella. The percentage of conserved proteins calculated from genomic sequence indicated a low level of relatedness between the novel strain and its phylogenetic neighbors. Growth of the novel strain occurred at temperatures between 10 and 41°C, and within a pH range of 6.0-9.0; optimal growth occurred at 30°C and at pH 6.0-9.0. Growth also occurred within a NaCl concentration of 1%-5% (w/v). The major fatty acids of the strain were C<sub>14:0</sub> , C<sub>16:0</sub> , and C<sub>18:1</sub> ω9c<sub>,</sub> and major polar lipids were glycolipid, phosphatidylinositol mannoside, phospholipid, diphosphatidylglycerol, and phosphatidylglycerol. Respiratory quinone was absent. On the basis of phenotypic and genotypic characteristics, we propose that the novel isolate should be classified as a novel species in a new genus: Ancrocorticia populi gen. nov., sp. nov. The type strain is sk1b4<sup>T</sup> (=CFCC 14564<sup>T</sup> = KCTC 39919<sup>T</sup> ).</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">30656854</PMID><DateRevised><Year>2020</Year><Month>04</Month><Day>16</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2045-8827</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2019</Year><Month>Jan</Month><Day>17</Day></PubDate></JournalIssue><Title>MicrobiologyOpen</Title><ISOAbbreviation>Microbiologyopen</ISOAbbreviation></Journal><ArticleTitle>Ancrocorticia populi gen. nov., sp. nov, isolated from the symptomatic bark of Populus × euramericana canker.</ArticleTitle><Pagination><MedlinePgn>e792</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/mbo3.792</ELocationID><Abstract><AbstractText>A Gram-staining positive facultative anaerobic, non-motile strain, sk1b4<sup>T</sup> , was isolated from canker of symptomatic bark tissue of a Populus × euramericana. 16S rRNA gene sequence analyses showed that strain sk1b4<sup>T</sup> shared the highest similarity with Arcanobacterium phocisimile (94.1%). Within the phylogenetic tree, the novel isolate formed a distinct branch from Actinobaculum, Arcanobacterium, and Trueperella. The percentage of conserved proteins calculated from genomic sequence indicated a low level of relatedness between the novel strain and its phylogenetic neighbors. Growth of the novel strain occurred at temperatures between 10 and 41°C, and within a pH range of 6.0-9.0; optimal growth occurred at 30°C and at pH 6.0-9.0. Growth also occurred within a NaCl concentration of 1%-5% (w/v). The major fatty acids of the strain were C<sub>14:0</sub> , C<sub>16:0</sub> , and C<sub>18:1</sub> ω9c<sub>,</sub> and major polar lipids were glycolipid, phosphatidylinositol mannoside, phospholipid, diphosphatidylglycerol, and phosphatidylglycerol. Respiratory quinone was absent. On the basis of phenotypic and genotypic characteristics, we propose that the novel isolate should be classified as a novel species in a new genus: Ancrocorticia populi gen. nov., sp. nov. The type strain is sk1b4<sup>T</sup> (=CFCC 14564<sup>T</sup> = KCTC 39919<sup>T</sup> ).</AbstractText><CopyrightInformation>© 2019 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Guan-Tang</ForeName><Initials>GT</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xue</LastName><ForeName>Han</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Piao</LastName><ForeName>Chun-Gen</ForeName><Initials>CG</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Guo</LastName><ForeName>Min-Wei</ForeName><Initials>MW</Initials><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Yong</ForeName><Initials>Y</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-4406-1329</Identifier><AffiliationInfo><Affiliation>The Key Laboratory of State Forestry Administration on Forest Protection, Research Institute of Forest Ecology Environment and Protection, Chinese Academy of Forestry, Beijing, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>31570640</GrantID><Agency>National Natural Science Foundation of China</Agency><Country></Country></Grant><Grant><GrantID>NIMR-2018-7</GrantID><Agency>National Infrastructure of Microbial Resources</Agency><Country></Country></Grant><Grant><Agency>Ministry of Science and Technology of the People's Republic of China</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>01</Month><Day>17</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Microbiologyopen</MedlineTA><NlmUniqueID>101588314</NlmUniqueID><ISSNLinking>2045-8827</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Ancrocorticia populi gen. nov.</Keyword><Keyword MajorTopicYN="N">canker</Keyword><Keyword MajorTopicYN="N">comparative genome</Keyword><Keyword MajorTopicYN="N">percentage of conserved proteins</Keyword><Keyword MajorTopicYN="N">polar lipids</Keyword><Keyword MajorTopicYN="N">sp. 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uniqKey="Guo M" first="Min-Wei" last="Guo">Min-Wei Guo</name><name sortKey="Li, Yong" sort="Li, Yong" uniqKey="Li Y" first="Yong" last="Li">Yong Li</name><name sortKey="Piao, Chun Gen" sort="Piao, Chun Gen" uniqKey="Piao C" first="Chun-Gen" last="Piao">Chun-Gen Piao</name><name sortKey="Xue, Han" sort="Xue, Han" uniqKey="Xue H" first="Han" last="Xue">Han Xue</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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